Release Notes

0.6.0a10

Features:

  • Added support for BigWig files in a new Continuous Data object (#63) New endpoints and message types include:
  • POST /continuoussets/search
  • GET /continuoussets/{id}
  • POST /continuous/search
  • Continuous (new)
  • ContinuousSet (new)
  • Add ability to list and join peer server networks (#60) New endpoints and message types include:
  • POST /peers/list
  • POST /peers/announce
  • GET /info
  • ListPeersResponse (new)
  • Peer (new)
  • AnnouncePeerResponse (new)
  • GetInfoResponse (new)
  • Remove feature_id from ExpressionLevel and add ability to search by the Name field (#67) Impacts
  • POST /expressionlevels/search
  • GET /expressionlevels/{id}
  • Replaced info fields with rich type Attributes fields (#46) Impacts the following message types:
  • TranscriptEffect
  • VariantAnnotation
  • Individual
  • Biosample
  • Experiment (new)
  • Analysis (new)
  • Dataset
  • ReadGroup
  • ReadGroupSet
  • ReadAlignment
  • Reference
  • ReferenceSet
  • RnaQuantificationSet
  • RnaQuantification
  • ExpressionLevel
  • Feature
  • VariantSetMetadata
  • CallSet
  • Call
  • Variant
  • Replace NCBI taxon ID integer with ontology term. Impacts the following message types:
  • Reference
  • ReferenceSet
  • Changed ontology term “id” to “term_id” (#48) Impacts the following message types:
  • OntologyTerm

Documentation:

  • Created a basic Info page for the Pypi repository (#68)

0.6.0a9.post2

Bugfix release which uses the new release process.

0.6.0a9.post1

Bugfix release which fixes the following issues:

  • wrong attributes on RnaQuantification (#53)
  • wrong attributes on ExpressionLevels (#51)

0.6.0a9

A new versioning scheme has been introduced that will make it easy to tell which version of the client to use against a protocol version!

  • Calls are now returned as ListValues and can be int32, empty, or strings

    to cover the case when a VCF call states no call was made.

  • Refactor “BioSample” to “Biosample”.

  • Switch to stable protobuf version (3.1).

  • Improve generated documentation.

  • Add authorization via headers.

0.0.4

0.0.3

Add hierachical namespace

0.0.2

Release using new ga4gh packages, ga4gh-common and ga4gh-schemas

0.0.1

Initial release